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1.
Biosens Bioelectron ; 23(10): 1481-7, 2008 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-18313912

RESUMO

Bioelectronic interfaces that establish electrical communication between redox enzymes and electrodes have potential applications as biosensors, biocatalytic reactors, and biological fuel cells. These interfaces are commonly formed on gold films deposited using physical vapor deposition (PVD) or chemical vapor deposition (CVD). PVD and CVD require deposition of a primer layer, such as titanium or chromium, and require the use of expensive equipment and cannot be used on a wide range of substrates. This paper describes a versatile new bench-top method to form bioelectronic interfaces containing a gold film, electron mediator, cofactor, and dehydrogenase enzyme (secondary alcohol dehydrogenase, and sorbitol dehydrogenase) on nonconductive substrates such as polystyrene and glass. The method combines layer-by-layer deposition of polyelectrolytes, electroless metal deposition, and directed molecular self-assembly. Cyclic voltammetry, chronoamperometry, field emission X-ray dispersive spectroscopy, scanning electron microscopy, and atomic force microscopy were used to characterize the bioelectronic interfaces. Interfaces formed on flexible polystyrene slides were shown to retain their activity after bending to a radius of curvature of 18mm, confirming that the approach can be applied on cheap and flexible substrates for applications where traditional wafer-scale electronics is not suitable, such as personal or structural health monitors and rolled microtube biosensors.


Assuntos
Técnicas Biossensoriais/instrumentação , Eletroquímica/instrumentação , Microeletrodos , Técnicas Biossensoriais/métodos , Condutividade Elétrica , Eletroquímica/métodos , Desenho de Equipamento , Análise de Falha de Equipamento , Propriedades de Superfície
2.
Appl Biochem Biotechnol ; 143(1): 1-15, 2007 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-18025592

RESUMO

Bioelectronic interfaces that facilitate electron transfer between the electrode and a dehydrogenase enzyme have potential applications in biosensors, biocatalytic reactors, and biological fuel cells. The secondary alcohol dehydrogenase (2 degrees ADH) from Thermoanaerobacter ethanolicus is especially well suited for the development of such bioelectronic interfaces because of its thermostability and facile production and purification. However, the natural cofactor for the enzyme, beta-nicotinamide adenine dinucleotide phosphate (NADP+), is more expensive and less stable than beta-nicotinamide adenine dinucleotide (NAD+). PCR-based, site-directed mutagenesis was performed on 2 degrees ADH in an attempt to adjust the cofactor specificity toward NAD+ by mutating Tyr218 to Phe (Y218F 2 degrees ADH). This mutation increased the Km(app) for NADP+ 200-fold while decreasing the Km(app) for NAD+ 2.5-fold. The mutant enzyme was incorporated into a bioelectronic interface that established electrical communication between the enzyme, the NAD+, the electron mediator toluidine blue O (TBO), and a gold electrode. Cyclic voltammetry, impedance spectroscopy, gas chromatography, mass spectrometry, constant potential amperometry, and chronoamperometry were used to characterize the mutant and wild-type enzyme incorporated in the bioelectronic interface. The Y218F 2 degrees ADH exhibited a fourfold increase in the turnover ratio compared to the wild type in the presence of NAD+. The electrochemical and kinetic measurements support the prediction that the Rossmann fold of the enzyme binds to the phosphate moiety of the cofactor. During the 45 min of continuous operation, NAD+ was electrically recycled 6.7 x 10(4) times, suggesting that the Y218F 2 degrees ADH-modified bioelectronic interface is stable.


Assuntos
Oxirredutases do Álcool/genética , Técnicas Biossensoriais , Fenilalanina/genética , Thermoanaerobacter/enzimologia , Thermoanaerobacter/genética , Tirosina/genética , Oxirredutases do Álcool/fisiologia , Eletroquímica , Mutagênese Sítio-Dirigida , NAD/genética , NAD/metabolismo
3.
Appl Microbiol Biotechnol ; 76(4): 727-40, 2007 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-17609945

RESUMO

Bio-based succinate is receiving increasing attention as a potential intermediary feedstock for replacing a large petrochemical-based bulk chemical market. The prospective economical and environmental benefits of a bio-based succinate industry have motivated research and development of succinate-producing organisms. Bio-based succinate is still faced with the challenge of becoming cost competitive against petrochemical-based alternatives. High succinate concentrations must be produced at high rates, with little or no by-products to most efficiently use substrates and to simplify purification procedures. Herein are described the current prospects for a bio-based succinate industry, with emphasis on specific bacteria that show the greatest promise for industrial succinate production. The succinate-producing characteristics and the metabolic pathway used by each bacterial species are described, and the advantages and disadvantages of each bacterial system are discussed.


Assuntos
Bacilos Gram-Negativos Anaeróbios Facultativos/metabolismo , Microbiologia Industrial , Succinatos/metabolismo , Butileno Glicóis/química , Bacilos Gram-Negativos Anaeróbios Facultativos/crescimento & desenvolvimento , Succinatos/química
4.
Langmuir ; 23(13): 7127-33, 2007 Jun 19.
Artigo em Inglês | MEDLINE | ID: mdl-17503864

RESUMO

Bioelectronic interfaces that establish electrical communication between redox enzymes and electrodes have potential applications as biosensors, biocatalytic reactors, and biological fuel cells. However, these interfaces contain labile components, including enzymes and cofactors, which have limited lifetimes and must be replaced periodically to allow long-term operation. Current methods to fabricate bioelectronic interfaces do not allow facile replacement of these components, thus limiting the useful lifetime of the interfaces. In this paper we describe a versatile new fabrication approach that binds the enzymes and cofactors using reversible ionic interactions. This approach allows the interface to be removed via a simple pH change and then replaced to fully regenerate the biocatalytic activity. The positively charged polyelectrolyte poly(ethylenimine) was used to ionically bond a dehydrogenase enzyme and its cofactor to a gold electrode that was functionalized with 3-mercaptopropionic acid and the electron mediator toluidine blue O. By reducing the pH, the surface-bound 3-mercaptopropionic acid was protonated, disrupting the ionic bonds and releasing the enzyme-modified polyelectrolyte. After neutralization, fresh enzyme and cofactor were bound, regenerating the bioelectronic interface. Cyclic voltammetry, chronoamperometry, constant potential amperometry, electrochemical impedance spectroscopy, and Fourier transform infrared spectroscopy analyses were used to characterize the bioelectronic interfaces. For the two enzymes tested (secondary alcohol dehydrogenase and sorbitol dehydrogenase) and their respective cofactors (beta-nicotinamide adenine dinucleotide phosphate and beta-nicotinamide adenine dinucleotide), the reconstituted interface exhibited a surface coverage, an electron-transfer coefficient, and a turnover rate similar to those of the original interface.


Assuntos
Álcool Desidrogenase/química , Proteínas de Bactérias/química , L-Iditol 2-Desidrogenase/química , Thermoanaerobacter/enzimologia , Álcool Desidrogenase/genética , Proteínas de Bactérias/genética , Técnicas Biossensoriais , Coenzimas/química , Impedância Elétrica , Eletrônica , Estabilidade Enzimática , Enzimas Imobilizadas/química , Enzimas Imobilizadas/genética , Concentração de Íons de Hidrogênio , L-Iditol 2-Desidrogenase/genética , NAD/química , NADP/química , Polietilenoimina/química , Thermoanaerobacter/genética
6.
Protein Eng Des Sel ; 20(2): 47-55, 2007 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-17283007

RESUMO

The secondary alcohol dehydrogenase from Thermoanaerobacter ethanolicus 39E (TeSADH) is highly thermostable and solvent-stable, and it is active on a broad range of substrates. These properties make TeSADH an excellent template to engineer an industrial catalyst for chiral chemical synthesis. (S)-1-Phenyl-2-propanol was our target product because it is a precursor to major pharmaceuticals containing secondary alcohol groups. TeSADH has no detectable activity on this alcohol, but it is highly active on 2-butanol. The structural model we used to plan our mutagenesis strategy was based on the substrate's orientation in a horse liver alcohol dehydrogenase*p-bromobenzyl alcohol*NAD(+) ternary complex (PDB entry 1HLD). The W110A TeSADH mutant now uses (S)-1-phenyl-2-propanol, (S)-4-phenyl-2-butanol and the corresponding ketones as substrates. W110A TeSADH's kinetic parameters on these substrates are in the same range as those of TeSADH on 2-butanol, making W110A TeSADH an excellent catalyst. In particular, W110A TeSADH is twice as efficient on benzylacetone as TeSADH is on 2-butanol, and it produces (S)-4-phenyl-2-butanol from benzylacetone with an enantiomeric excess above 99%. W110A TeSADH is optimally active at 87.5 degrees C and remains highly thermostable. W110A TeSADH is active on aryl derivatives of phenylacetone and benzylacetone, making this enzyme a potentially useful catalyst for the chiral synthesis of aryl derivatives of alcohols. As a control in our engineering approach, we used the TbSADH*(S)-2-butanol binary complex (PDB entry 1BXZ) as the template to model a mutation that would make TeSADH active on (S)-1-phenyl-2-propanol. Mutant Y267G TeSADH did not have the substrate specificity predicted in this modeling study. Our results suggest that (S)-2-butanol's orientation in the TbSADH*(S)-2-butanol binary complex does not reflect its orientation in the ternary enzyme-substrate-cofactor complex.


Assuntos
Acetona/análogos & derivados , Acetona/química , Oxirredutases do Álcool/metabolismo , Compostos de Benzil/metabolismo , Mutação , Thermoanaerobacter/enzimologia , Acetona/metabolismo , Oxirredutases do Álcool/química , Oxirredutases do Álcool/genética , Sítios de Ligação , Catálise , Estrutura Molecular , Oxirredução , Álcool Feniletílico/análogos & derivados , Álcool Feniletílico/metabolismo , Estereoisomerismo , Especificidade por Substrato
7.
Protein J ; 26(4): 265-9, 2007 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-17216567

RESUMO

The kinetic affinity for CO(2) of phosphoenolpyruvate PEP(5) carboxykinase from Anaerobiospirillum succiniciproducens, an obligate anaerobe which PEP carboxykinase catalyzes the carboxylation of PEP in one of the final steps of succinate production from glucose, is compared with that of the PEP carboxykinase from Saccharomyces cerevisiae, which catalyzes the decarboxylation of oxaloacetate in one of the first steps in the biosynthesis of glucose. For the A. succiniciproducens enzyme, at physiological concentrations of Mn(2+) and Mg(2+), the affinity for CO(2) increases as the ATP/ADP ratio is increased in the assay medium, while the opposite effect is seen for the S. cerevisiae enzyme. The results show that a high ATP/ADP ratio favors CO(2) fixation by the PEP carboxykinase from A. succiniciproducens but not for the S. cerevisiae enzyme. These findings are in agreement with the proposed physiological roles of S. cerevisiae and A. succiniciproducens PEP carboxykinases, and expand recent observations performed with the enzyme isolated from Panicum maximum (Chen et al. (2002) Plant Physiology 128: 160-164).


Assuntos
Difosfato de Adenosina/química , Trifosfato de Adenosina/química , Anaerobiospirillum/metabolismo , Magnésio/química , Manganês/química , Fosfoenolpiruvato Carboxiquinase (ATP)/química , Saccharomyces cerevisiae/metabolismo , Dióxido de Carbono/química , Relação Dose-Resposta a Droga , Íons , Cinética , Metais/química , Modelos Biológicos , Modelos Químicos , Especificidade da Espécie
8.
Metab Eng ; 9(2): 177-92, 2007 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-17197218

RESUMO

Actinobacillus succinogenes is a promising candidate for industrial succinate production. However, in addition to producing succinate, it also produces formate and acetate. To understand carbon flux distribution to succinate and alternative products we fed A. succinogenes [1-(13)C]glucose and analyzed the resulting isotopomers of excreted organic acids, proteinaceous amino acids, and glycogen monomers by gas chromatography-mass spectrometry and nuclear magnetic resonance spectroscopy. The isotopomer data, together with the glucose consumption and product formation rates and the A. succinogenes biomass composition, were supplied to a metabolic flux model. Oxidative pentose phosphate pathway flux supplied, at most, 20% of the estimated NADPH requirement for cell growth. The model indicated that NADPH was instead produced primarily by the conversion of NADH to NADPH by transhydrogenase and/or by NADP-dependent malic enzyme. Transhydrogenase activity was detected in A. succinogenes cell extracts, as were formate and pyruvate dehydrogenases, which the model suggested were contributing to NADH production. Malic enzyme activity was also detected in cell extracts, consistent with the flux analysis results. Labeling patterns in amino acids and organic acids showed that oxaloacetate and malate were being decarboxylated to pyruvate. These are the first in vivo experiments to show that the partitioning of flux between succinate and alternative fermentation products can occur at multiple nodes in A. succinogenes. The implications for designing effective metabolic engineering strategies to increase A. succinogenes succinate production are discussed.


Assuntos
Actinobacillus/metabolismo , Cromatografia Gasosa-Espectrometria de Massas/métodos , Perfilação da Expressão Gênica/métodos , Espectroscopia de Ressonância Magnética/métodos , Modelos Biológicos , Proteoma/metabolismo , Transdução de Sinais/fisiologia , Isótopos de Carbono , Simulação por Computador , Metabolismo Energético/fisiologia , Complexos Multienzimáticos/metabolismo
9.
J Org Chem ; 72(1): 30-4, 2007 Jan 05.
Artigo em Inglês | MEDLINE | ID: mdl-17194078

RESUMO

An enantioselective asymmetric reduction of phenyl ring-containing prochiral ketones to yield the corresponding optically active secondary alcohols was achieved with W110A secondary alcohol dehydrogenase from Thermoanaerobacter ethanolicus (W110A TESADH) in Tris buffer using 2-propanol (30%, v/v) as cosolvent and cosubstrate. This concentration of 2-propanol was crucial not only to enhance the solubility of hydrophobic phenyl ring-containing substrates in the aqueous reaction medium, but also to shift the equilibrium in the reduction direction. The resulting alcohols have S-configuration, in agreement with Prelog's rule, in which the nicotinamide-adenine dinucleotide phosphate (NADPH) cofactor transfers its pro-R hydride to the re face of the ketone. A series of phenyl ring-containing ketones, such as 4-phenyl-2-butanone (1a) and 1-phenyl-1,3-butadione (2a), were reduced with good to excellent yields and high enantioselectivities. On the other hand, 1-phenyl-2-propanone (7a) was reduced with lower ee than 2-butanone derivatives. (R)-Alcohols, the anti-Prelog products, were obtained by enantiospecific oxidation of (S)-alcohols through oxidative kinetic resolution of the rac-alcohols using W110A TESADH in Tris buffer/acetone (90:10, v/v).


Assuntos
Álcool Desidrogenase/metabolismo , Álcoois/química , Álcoois/metabolismo , Cetonas/química , Cetonas/metabolismo , Triptofano/metabolismo , Álcool Desidrogenase/genética , Cromatografia Gasosa , Estrutura Molecular , Oxirredução , Especificidade por Substrato , Thermoanaerobacter/enzimologia , Triptofano/genética
10.
Environ Sci Technol ; 40(22): 6990-5, 2006 Nov 15.
Artigo em Inglês | MEDLINE | ID: mdl-17154006

RESUMO

The benthic microbial fuel cell (BMFC) generates power by coupling oxidation of fuels naturally residing in marine sediments with reduction of oxygen in overlying waters. A central feature of BMFCs is spontaneous colonization of the anode by mineral-reducing microorganisms indigenous to marine sediments that catalyze the power-generating anodic reactions. Described here is a preliminary investigation of how the anode potential affects this feature. Different oxidative potentials were applied to a set of anodes under conditions known to promote anode enrichment of acetate oxidizing/mineral reducing microorganisms. In-situ analysis of current, acetate consumption, and reducing ability of the anode colonies suggest thatthe microorganisms conserve a significant portion (as much as 95%) of potential energy liberated from oxidation of acetate and reduction of the anode for their own metabolic benefit. The implication of this result with respect to BMFCs, and other MFCs utilizing electrode-reducing microbial catalysts, is that although the microorganisms enable long-term stability of such fuel cells, they may significantly impact efficiency of power output per equivalent of fuel consumed.


Assuntos
Fontes de Energia Bioelétrica , Sedimentos Geológicos/microbiologia , Água do Mar/microbiologia , Acetatos/metabolismo , Eletrodos , Oxirredução , Oxigênio/química
11.
Biosens Bioelectron ; 21(11): 2058-63, 2006 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-16574400

RESUMO

Here, we report a comparative study on the kinetic activity of various anodes of a recently described microbial fuel cell consisting of an anode imbedded in marine sediment and a cathode in overlying seawater. Using plain graphite anodes, it was demonstrated that a significant portion of the anodic current results from oxidation of sediment organic matter catalyzed by microorganisms colonizing the anode and capable of directly reducing the anode without added exogenous electron-transfer mediators. Here, graphite anodes incorporating microbial oxidants are evaluated in the laboratory relative to plain graphite with the goal of increasing power density by increasing current density. Anodes evaluated include graphite modified by adsorption of anthraquinone-1,6-disulfonic acid (AQDS) or 1,4-naphthoquinone (NQ), a graphite-ceramic composite containing Mn2+ and Ni2+, and graphite modified with a graphite paste containing Fe3O4 or Fe3O4 and Ni2+. It was found that these anodes possess between 1.5- and 2.2-fold greater kinetic activity than plain graphite. Fuel cells were deployed in a coastal site near Tuckerton, NJ (USA) that utilized two of these anodes. These fuel cells generated ca. 5-fold greater current density than a previously characterized fuel cell equipped with a plain graphite anode, and operated at the same site.


Assuntos
Eletroquímica , Fontes Geradoras de Energia , Sedimentos Geológicos , Eletrodos , Óxido Ferroso-Férrico , Cinética , Oceanos e Mares , Água do Mar
12.
Appl Environ Microbiol ; 71(11): 6651-6, 2005 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-16269693

RESUMO

Chemically defined media allow for a variety of metabolic studies that are not possible with undefined media. A defined medium, AM3, was created to expand the experimental opportunities for investigating the fermentative metabolism of succinate-producing Actinobacillus succinogenes. AM3 is a phosphate-buffered medium containing vitamins, minerals, NH4Cl as the main nitrogen source, and glutamate, cysteine, and methionine as required amino acids. A. succinogenes growth trends and end product distributions in AM3 and rich medium fermentations were compared. The effects of NaHCO3 concentration in AM3 on end product distribution, growth rate, and metabolic rates were also examined. The A. succinogenes growth rate was 1.3 to 1.4 times higher at an NaHCO3 concentration of 25 mM than at any other NaHCO3 concentration, likely because both energy-producing metabolic branches (i.e., the succinate-producing branch and the formate-, acetate-, and ethanol-producing branch) were functioning at relatively high rates in the presence of 25 mM bicarbonate. To improve the accuracy of the A. succinogenes metabolic map, the reasons for A. succinogenes glutamate auxotrophy were examined by enzyme assays and by testing the ability of glutamate precursors to support growth. Enzyme activities were detected for glutamate synthesis that required glutamine or alpha-ketoglutarate. The inability to synthesize alpha-ketoglutarate from glucose indicates that at least two tricarboxylic acid cycle-associated enzyme activities are absent in A. succinogenes.


Assuntos
Actinobacillus/crescimento & desenvolvimento , Actinobacillus/metabolismo , Meios de Cultura/química , Succinatos/metabolismo , Actinobacillus/enzimologia , Biotecnologia/métodos , Ciclo do Ácido Cítrico , Fermentação , Glutamatos/metabolismo , Bicarbonato de Sódio/metabolismo
13.
Acta Crystallogr D Biol Crystallogr ; 61(Pt 7): 903-12, 2005 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-15983413

RESUMO

Actinobacillus succinogenes can produce, via fermentation, high concentrations of succinate, an important industrial commodity. A key enzyme in this pathway is phosphoenolpyruvate carboxykinase (PCK), which catalyzes the production of oxaloacetate from phosphoenolpyruvate and carbon dioxide, with the concomitant conversion of adenosine 5'-diphosphate to adenosine 5'-triphosphate. 1.85 and 1.70 A resolution structures of the native and a pyruvate/Mn(2+)/phosphate complex have been solved, respectively. The structure of the complex contains sulfhydryl reducing agents covalently bound to three cysteine residues via disulfide bonds. One of these cysteine residues (Cys285) is located in the active-site cleft and may be analogous to the putative reactive cysteine of PCK from Trypanosoma cruzi. Cys285 is also part of a previously unreported conserved motif comprising residues 280-287 and containing the pattern NXEXGXY(/F)A(/G); this new motif appears to have a structural role in stabilizing and positioning side chains that bind substrates and metal ions. The first few residues of this motif connect the two domains of the enzyme and a fulcrum point appears to be located near Asn280. In addition, an active-site Asp residue forms two coordinate bonds with the Mn(2+) ion present in the structure of the complex in a symmetrical bidentate manner, unlike in other PCK structures that contain a manganese ion.


Assuntos
Actinobacillus/enzimologia , Fosfoenolpiruvato Carboxiquinase (ATP)/química , Sequência de Aminoácidos , Sítios de Ligação , Sequência Conservada , Cristalografia por Raios X , Cisteína/química , Ligantes , Manganês/química , Estrutura Terciária de Proteína , Alinhamento de Sequência , Succinatos/metabolismo
14.
Int J Biochem Cell Biol ; 37(9): 1829-37, 2005 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-15890557

RESUMO

The 2.2 Angstroms resolution crystal structure of the enzyme phosphoenolpyruvate carboxykinase (PCK) from the bacterium Anaerobiospirillum succiniciproducens complexed with ATP, Mg(2+), Mn(2+) and the transition state analogue oxalate has been solved. The 2.4 Angstroms resolution native structure of A. succiniciproducens PCK has also been determined. It has been found that upon binding of substrate, PCK undergoes a conformational change. Two domains of the molecule fold towards each other, with the substrates and metal ions held in a cleft formed between the two domains. This domain movement is believed to accelerate the reaction PCK catalyzes by forcing bulk solvent molecules out of the active site. Although the crystal structure of A. succiniciproducens PCK with bound substrate and metal ions is related to the structures of PCK from Escherichia coli and Trypanosoma cruzi, it is the first crystal structure from this class of enzymes that clearly shows an important surface loop (residues 383-397) from the C-terminal domain, hydrogen bonding with the peptide backbone of the active site residue Arg60. The interaction between the surface loop and the active site backbone, which is a parallel beta-sheet, seems to be a feature unique of A. succiniciproducens PCK. The association between the loop and the active site is the third type of interaction found in PCK that is thought to play a part in the domain closure. This loop also appears to help accelerate catalysis by functioning as a 'lid' that shields water molecules from the active site.


Assuntos
Anaerobiospirillum/enzimologia , Fosfoenolpiruvato Carboxiquinase (ATP)/química , Trifosfato de Adenosina/metabolismo , Sítios de Ligação , Cristalografia por Raios X , Magnésio/metabolismo , Manganês/metabolismo , Modelos Moleculares , Estrutura Molecular , Fosfoenolpiruvato Carboxiquinase (ATP)/metabolismo , Estrutura Secundária de Proteína
15.
FEBS J ; 272(6): 1454-64, 2005 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-15752361

RESUMO

The effects of divalent metal cations on structural thermostability and the inactivation kinetics of homologous class II d-xylose isomerases (XI; EC 5.3.1.5) from mesophilic (Escherichia coli and Bacillus licheniformis), thermophilic (Thermoanaerobacterium thermosulfurigenes), and hyperthermophilic (Thermotoga neapolitana) bacteria were examined. Unlike the three less thermophilic XIs that were substantially structurally stabilized in the presence of Co2+ or Mn2+ (and Mg2+ to a lesser extent), the melting temperature [(Tm) approximately 100 degrees C] of T. neapolitana XI (TNXI) varied little in the presence or absence of a single type of metal. In the presence of any two of these metals, TNXI exhibited a second melting transition between 110 degrees C and 114 degrees C. TNXI kinetic inactivation, which was non-first order, could be modeled as a two-step sequential process. TNXI inactivation in the presence of 5 mm metal at 99-100 degrees C was slowest in the presence of Mn2+[half-life (t(1/2)) of 84 min], compared to Co2+ (t(1/2) of 14 min) and Mg2+ (t(1/2) of 2 min). While adding Co2+ to Mg2+ increased TNXI's t(1/2) at 99-100 degrees C from 2 to 7.5 min, TNXI showed no significant activity at temperatures above the first melting transition. The results reported here suggest that, unlike the other class II XIs examined, single metals are required for TNXI activity, but are not essential for its structural thermostability. The structural form corresponding to the second melting transition of TNXI in the presence of two metals is not known, but likely results from cooperative interactions between dissimilar metals in the two metal binding sites.


Assuntos
Aldose-Cetose Isomerases/química , Aldose-Cetose Isomerases/metabolismo , Cátions Bivalentes/farmacologia , Aldose-Cetose Isomerases/antagonistas & inibidores , Bacillus/enzimologia , Proteínas de Bactérias/antagonistas & inibidores , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Cobalto/farmacologia , Estabilidade Enzimática , Escherichia coli/enzimologia , Cinética , Magnésio/farmacologia , Manganês/farmacologia , Desnaturação Proteica , Proteínas Recombinantes/antagonistas & inibidores , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Termodinâmica , Thermotoga maritima/enzimologia
16.
Appl Microbiol Biotechnol ; 68(1): 36-41, 2005 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-15630578

RESUMO

A gene encoding mannitol-2-dehydrogenase (E.C. 1.1.1.138) (MDH) was cloned from Lactobacillus reuteri and expressed in Escherichia coli. The 1,008-bp gene encodes a protein consisting of 336 amino acids, with a predicted molecular mass of 35,920 Da. The deduced amino acid sequence of L. reuteri MDH (LRMDH) is 77% and 76% similar to the MDHs from Leuconostoc mesenteroides and Leuconostoc pseudomesenteroides, respectively. The purified recombinant enzyme appears as a single band of 40 kDa in sodium dodecyl sulfate-polyacrylamide gel electrophoresis, but gel filtration indicates that the native enzyme is a dimer. The optimum temperature for the recombinant enzyme is 37 degrees C, the pH optima for D-fructose reduction and D-mannitol oxidation are 5.4 and 6.2, respectively. The K(m) values for NAD (9 mM) and NADH (0.24 mM) are significantly higher than those for NADP (0.35 mM) and NADPH (0.04 mM). The K(m) values of LRMDH for D-fructose and D-mannitol are 34 mM and 54 mM, respectively. Contrary to what the enzyme sequence suggests, recombinant LRMDH contains a single catalytic zinc per subunit.


Assuntos
Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Lactobacillus/enzimologia , Manitol Desidrogenases/metabolismo , Sequência de Aminoácidos , Clonagem Molecular , Expressão Gênica , Genes Bacterianos , Lactobacillus/genética , Manitol Desidrogenases/genética , Dados de Sequência Molecular , Proteínas Recombinantes , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Zinco/química
17.
Appl Environ Microbiol ; 70(6): 3467-74, 2004 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-15184145

RESUMO

Both microbial iron reduction and microbial reduction of anodes in fuel cells can occur by way of soluble electron mediators. To test whether neutral red (NR) mediates iron reduction, as it does anode reduction, by Escherichia coli, ferrous iron levels were monitored in anaerobic cultures grown with amorphous iron oxide. Ferrous iron levels were 19.4 times higher in cultures fermenting pyruvate in the presence of NR than in the absence of NR. NR did not stimulate iron reduction in cultures respiring with nitrate. To explore the mechanism of NR-mediated iron reduction, cell extracts of E. coli were used. Cell extract-NADH-NR mixtures had an enzymatic iron reduction rate almost 15-fold higher than the chemical NR-mediated iron reduction rate observed in controls with no cell extract. Hydrogen was consumed during stationary phase (in which iron reduction was detectable) especially in cultures containing both NR and iron oxide. An E. coli hypE mutant, with no hydrogenase activity, was also impaired in NR-mediated iron reduction activity. NR-mediated iron reduction rates by cell extracts were 1.5 to 2 times higher with hydrogen or formate as the electron source than with NADH. Our findings suggest that hydrogenase donates electrons to NR for extracellular iron reduction. This process appears to be analogous to those of iron reduction by bacteria that use soluble electron mediators (e.g., humic acids and 2,6-anthraquinone disulfonate) and of anode reduction by bacteria using soluble mediators (e.g., NR and thionin) in microbial fuel cells.


Assuntos
Escherichia coli/enzimologia , Hidrogenase/metabolismo , Ferro/metabolismo , Vermelho Neutro/metabolismo , Anaerobiose , Meios de Cultura , Transporte de Elétrons , Escherichia coli/crescimento & desenvolvimento , Escherichia coli/metabolismo , Compostos Ferrosos/metabolismo , Hidrogênio/metabolismo , Ferro/química , Oxirredução
18.
Appl Environ Microbiol ; 70(2): 1238-41, 2004 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-14766613

RESUMO

Succinate fermentation was investigated in Escherichia coli strains overexpressing Actinobacillus succinogenes phosphoenolpyruvate carboxykinase (PEPCK). In E. coli K-12, PEPCK overexpression had no effect on succinate fermentation. In contrast, in the phosphoenolpyruvate carboxylase mutant E. coli strain K-12 ppc::kan, PEPCK overexpression increased succinate production 6.5-fold.


Assuntos
Actinobacillus/enzimologia , Actinobacillus/genética , Escherichia coli/enzimologia , Fosfoenolpiruvato Carboxiquinase (ATP)/metabolismo , Ácido Succínico/metabolismo , Meios de Cultura , Escherichia coli/genética , Escherichia coli/crescimento & desenvolvimento , Fermentação , Engenharia Genética/métodos , Mutação , Fosfoenolpiruvato Carboxiquinase (ATP)/genética , Fosfoenolpiruvato Carboxilase/genética , Fosfoenolpiruvato Carboxilase/metabolismo
19.
Protein Eng ; 16(9): 683-90, 2003 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-14560054

RESUMO

The Thermotoga neapolitana xylose isomerase (TNXI) is extremely thermostable and optimally active at 95 degrees C. Its derivative, TNXI Val185Thr (V185T), is the most active type II xylose isomerase reported, with a catalytic efficiency of 25.1 s(-1) mM(-1) toward glucose at 80 degrees C (pH 7.0). To further optimize TNXI's potential industrial utility, two rounds of random mutagenesis and low temperature/low pH activity screening were performed using the TNXI V185T-encoding gene as the template. Two highly active mutants were obtained, 3A2 (V185T/L282P) and 1F1 (V185T/L282P/F186S). 1F1 was more active than 3A2, which in turn was more active than TNXI V185T at all temperatures and pH values tested. 3A2 and 1F1's high activities at low temperatures were due to significantly lower activation energies (57 and 44 kJ/mol, respectively) than that of TNXI and V185T (87 kJ/mol). Mutation L282P introduced a kink in helix alpha7 of 3A2's (alpha/beta)8 barrel. Surprisingly, this mutation kinetically destabilized 3A2 only at pH 5.5. 1F1 displayed kinetic stability slightly above that of TNXI V185T. In 1F1, mutation F186S creates a cavity that disrupts a four-residue network of aromatic interactions. How the conformation of the neighboring residues is affected by this cavity and how these conformational changes increase 1F1's stability still remain unclear.


Assuntos
Aldose-Cetose Isomerases/química , Glucose/metabolismo , Bacilos Gram-Negativos Anaeróbios Retos, Helicoidais e Curvos/enzimologia , Aldose-Cetose Isomerases/genética , Estabilidade Enzimática , Concentração de Íons de Hidrogênio , Mutação , Estrutura Terciária de Proteína , Temperatura
20.
Biochem J ; 372(Pt 2): 577-85, 2003 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-12625835

RESUMO

The adenylate kinase (AK) gene from Thermotoga neapolitana, a hyperthermophilic bacterium, was cloned and overexpressed in Escherichia coli, and the recombinant enzyme was biochemically characterized. The T. neapolitana AK (TNAK) sequence indicates that this enzyme belongs to the long bacterial AKs. TNAK contains the four cysteine residues that bind Zn(2+) in all Gram-positive AKs and in a few other Zn(2+)-containing bacterial AKs. Atomic emission spectroscopy and titration data indicate a content of 1 mol of Zn(2+)/mol of recombinant TNAK. The EDTA-treated enzyme has a melting temperature (T (m)=93.5 degrees C) 6.2 degrees C below that of the holoenzyme (99.7 degrees C), identifying Zn(2+) as a stabilizing feature in TNAK. TNAK is a monomeric enzyme with a molecular mass of approx. 25 kDa. TNAK displays V (max) and K (m) values at 30 degrees C identical with those of the E. coli AK at 30 degrees C, and displays very high activity at 80 degrees C, with a specific activity above 8000 units/mg. The unusually high activity of TNAK at 30 degrees C makes it an interesting model to test the role of enzyme flexibility in activity.


Assuntos
Adenilato Quinase/metabolismo , Bacilos Gram-Negativos Anaeróbios Retos, Helicoidais e Curvos/enzimologia , Temperatura Alta , Adenilato Quinase/química , Adenilato Quinase/genética , Sequência de Aminoácidos , Apoenzimas , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Dicroísmo Circular , Clonagem Molecular , DNA Bacteriano/genética , DNA Bacteriano/metabolismo , Estabilidade Enzimática , Escherichia coli/genética , Escherichia coli/metabolismo , Bacilos Gram-Negativos Anaeróbios Retos, Helicoidais e Curvos/genética , Concentração de Íons de Hidrogênio , Cinética , Dados de Sequência Molecular , Dobramento de Proteína , Homologia de Sequência de Aminoácidos , Espectrofotometria , Zinco/química , Zinco/metabolismo
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